FastQCFastQC Report
Wed 8 May 2024
EGAF00007962400

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962400
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433919
Total Bases19 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21460.4945623491942044No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG18860.4346433320504518No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18290.42150723983047533No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG15850.3652755468186459No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14030.32333223481801904No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13020.3000560012352536No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12910.29752096589455634No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12100.27885388747669493No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10680.2461288858058762No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10450.24082835736623656No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10420.24013698409150094No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10070.23207096255291887No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9850.22700089187152442No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG8950.20625969362945618No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8790.20257236949753296No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8770.20211145398104255No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8130.18736215745334958No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7960.18344437556318116No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7650.17630018505757988No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7560.17422606523337306No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7400.17053874110144981No Hit
GCCGCCTTCCGTGCAAGAGGTTTTACGGAACCAGGAAAATGGGT7060.16270317732111292No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6940.1599376842221705No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6870.15832447991445409No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT6760.15578944457375685No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6700.15440669802428564No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6580.1516412049253432No Hit
GATGCGATGCGGGGAGTCGCAGATACGACCGGTAGAGCTGGACT6580.1516412049253432No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG6400.14749296527692957No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6350.14634067648570356No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6240.14380564114500632No Hit
TCAGCATTTACCGAAGTGAGACAGGGTCAGGGTGCCGTTAGATT6040.13919648598010229No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA5770.1329741265074818No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5750.1325132109909914No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5530.12744314030959694No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5350.12329490066118332No Hit
GTCAATCAGGGTACAGTTTTTACCATCCAGGATGCGGTGCGGAG5050.11638116791382724No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT4990.11499842136435602No Hit
GCATTTACCGAAGTGGGACAGGGTCAGAGTACCGTTGCTTTCCA4970.11453750584786561No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG4950.11407659033137521No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC4890.112693843781904No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA4830.11131109723243279No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG4800.11061972395769717No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4630.10670194206752874No Hit
ACGACGAGAACGGCGAGAGCCTGCGGACTCACCCTGACCGGACT4550.1048582800015671No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4550.1048582800015671No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4460.1027841601773603No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT4460.1027841601773603No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4450.10255370241911507No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)