FastQCFastQC Report
Wed 8 May 2024
EGAF00007962402

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962402
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412082
Total Bases18.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20340.4935910813867143No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG18160.4406889890846967No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16950.41132590115559525No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG15130.3671599341878558No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12940.31401517173766386No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12170.29532957032823565No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12020.29168951810561977No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11070.2686358540290525No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10050.24388349891526442No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG10000.24267014817439245No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9990.24242747802621809No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9820.2383020855072534No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9810.238059415359079No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9700.2353900437291607No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8460.20529894535553603No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8170.19826151105847867No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7790.18904004542785174No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7700.1868560140942822No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7440.180546590241748No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7310.1773918783154809No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7240.17569318727826017No Hit
GCCGCCTTCCGTGCAAGAGGTTTTACGGAACCAGGAAAATGGGT7060.1713251246111211No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6760.16404502016588932No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6710.16283166942501734No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6710.16283166942501734No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG6580.15967695749875024No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6250.1516688426089953No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT6230.15118350231264652No Hit
TCAGCATTTACCGAAGTGAGACAGGGTCAGGGTGCCGTTAGATT6070.14730077994185622No Hit
GATGCGATGCGGGGAGTCGCAGATACGACCGGTAGAGCTGGACT5970.1448740784601123No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5910.14341805757106593No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5810.14099135608932203No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5530.13419659194043904No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA5530.13419659194043904No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5290.1283725083842536No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5190.1259458069025097No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT4990.12109240393902185No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA4960.12036439349449868No Hit
GTCAATCAGGGTACAGTTTTTACCATCCAGGATGCGGTGCGGAG4860.11793769201275475No Hit
ACGACGAGAACGGCGAGAGCCTGCGGACTCACCCTGACCGGACT4690.11381229949379006No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4680.11356962934561568No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4650.11284161890109251No Hit
GCATTTACCGAAGTGGGACAGGGTCAGAGTACCGTTGCTTTCCA4540.11017224727117418No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT4510.10944423682665101No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4390.10653219504855829No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG4310.10459083386316316No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4300.10434816371498877No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4290.10410549356681437No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG4250.1031348129741168No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)