FastQCFastQC Report
Wed 8 May 2024
EGAF00007962403

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962403
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412082
Total Bases12.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39310.9539363524735368No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27790.6743803417766367No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20080.48728165753418007No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18350.4452997219000102No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG17760.430982183157721No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17130.4156939638227343No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16960.41156857130376967No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT14750.35793846855722894No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13640.3310020821098713No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12930.3137725015894895No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12310.29872695240267716No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11800.28635077484578314No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10520.25528899587946086No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10260.2489795720269267No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10090.244854179507962No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA9900.24024344669264855No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9020.21888847365330202No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8680.2106376886153727No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8470.20554161550371042No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8430.20457093491101286No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8170.19826151105847867No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7460.18103193053809677No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT7070.17156779475929548No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7030.1705971141665979No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6840.16598638135128443No Hit
ACTAGCTGTCCGTTCACCCTGCCTCGTGGTG6830.16574371120311007No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG6530.15846360675787827No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA6460.15676491572065754No Hit
GGTAACGATAATTCTACTGCAACTCTGTGTC6160.14948481127542576No Hit
GTGAGCGTAGACTGCTCCGAATACCCAAAAC5980.14511674860828672No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5880.14269004712654276No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5860.14220470683019398No Hit
CTGGGCCATCACGCAGTGCCGAACGGTACCC5750.13953533520027567No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5600.13589528297765976No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5540.13443926208861345No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5250.12740182779155607No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5230.1269164874952073No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4700.11405496964196446No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4660.11308428904926689No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4540.11017224727117418No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4510.10944423682665101No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4490.10895889653030222No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4480.10871622638212783No Hit
GGCCGCTCCGACGCGTCCCATGGCCAGTCTG4470.10847355623395344No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4310.10459083386316316No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG4270.10362015327046559No Hit
TCTATCGTAGTGACCGGCAACGCAGGTTCCG4240.10289214282594242No Hit
GCAGTTTCTGTTGACTGCTCTGAATACCCGA4210.10216413238141922No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4200.10192146223324484No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC4200.10192146223324484No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)