FastQCFastQC Report
Wed 8 May 2024
EGAF00007962404

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962404
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438965
Total Bases19.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21950.5000398665041632No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19610.44673265522308153No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG19160.4364812684382582No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG16230.36973335003929697No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14420.3284999943047851No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13360.3043522832116456No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12720.28977253311767454No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12250.27906552914241456No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11160.2542343922636201No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10890.2480835601927261No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10180.23190914993222694No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG10090.22985887257526227No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9380.21368446231476312No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9350.21300103652910823No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8940.20366088412515806No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8740.1991047122207921No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7970.18156345038898317No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7740.17632385269896234No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7610.17336234096112446No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7410.16880616905675852No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG7200.16402218855717426No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7050.1606050596288998No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7020.1599216338432449No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6980.15901039946237172No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT6880.15673231351018874No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6850.15604888772453385No Hit
GCCGCCTTCCGTGCAAGAGGTTTTACGGAACCAGGAAAATGGGT6840.15582107912931556No Hit
GATGCGATGCGGGGAGTCGCAGATACGACCGGTAGAGCTGGACT6640.1512649072249496No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6430.14648092672536536No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA6270.1428359892018726No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6250.14238037201143597No Hit
TCAGCATTTACCGAAGTGAGACAGGGTCAGGGTGCCGTTAGATT6240.14215256341621768No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6110.1391910516783798No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5820.1325846024170492No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5770.1314455594409577No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5670.12916747348877472No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5340.12164978984657092No Hit
ACGACGAGAACGGCGAGAGCCTGCGGACTCACCCTGACCGGACT4970.1132208718234939No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4880.11117059446652923No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG4820.10980374289521944No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG4810.10957593430000113No Hit
GTCAATCAGGGTACAGTTTTTACCATCCAGGATGCGGTGCGGAG4780.10889250851434625No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA4740.10798127413347304No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT4660.10615880537172667No Hit
GCATTTACCGAAGTGGGACAGGGTCAGAGTACCGTTGCTTTCCA4620.1052475709908535No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4620.1052475709908535No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4590.10456414520519858No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4580.10433633660998029No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA4420.10069139908648753No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)