FastQCFastQC Report
Wed 8 May 2024
EGAF00007962406

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962406
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416396
Total Bases18.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20230.4858355988049837No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG18540.44524923390234294No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16660.4000999048982219No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG15880.3813677364816185No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13290.31916733109828144No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13260.3184468630822582No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12640.3035571907511119No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11640.279541590217005No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10300.24736068550130164No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10000.24015600534106957No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9910.23799460129299996No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9610.23078992113276783No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG9540.22910882909538038No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9230.2216639929298072No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8490.20389244853456803No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7880.18924293220876282No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7530.18083747202182537No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7510.18035716001114324No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7390.17747528794705042No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6970.1673887357227255No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6920.16618795569602013No Hit
GCCGCCTTCCGTGCAAGAGGTTTTACGGAACCAGGAAAATGGGT6690.16066436757317554No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6590.15826280751976485No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6490.15586124746635413No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG6440.15466046743964879No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT6420.15418015542896665No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6260.15033765934350954No Hit
GATGCGATGCGGGGAGTCGCAGATACGACCGGTAGAGCTGGACT6210.1491368793168042No Hit
TCAGCATTTACCGAAGTGAGACAGGGTCAGGGTGCCGTTAGATT6190.14865656730612206No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6130.14721563127407564No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5770.13857001508179714No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5770.13857001508179714No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5490.13184564693224718No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA5110.12271971872928654No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5080.12199925071326334No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5050.12127878269724013No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5020.12055831468121693No Hit
ACGACGAGAACGGCGAGAGCCTGCGGACTCACCCTGACCGGACT5010.12031815867587585No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4800.11527488256371339No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4690.11263316650496162No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT4660.11191269848893841No Hit
GTCAATCAGGGTACAGTTTTTACCATCCAGGATGCGGTGCGGAG4620.11095207446757413No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA4590.11023160645155093No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4550.10927098243018664No Hit
GCATTTACCGAAGTGGGACAGGGTCAGAGTACCGTTGCTTTCCA4520.10855051441416344No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4420.10614895436075274No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG4410.10590879835541168No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4390.10542848634472954No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG4360.10470801832870633No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC4350.10446786232336527No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA4310.10350723830200098No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG4180.10038521023256707No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)