FastQCFastQC Report
Wed 8 May 2024
EGAF00007962407

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962407
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416396
Total Bases12.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36650.88017175957502No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA29210.7014956916012641No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20140.4836741947569141No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18020.43276112162460734No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG17870.42915878154449133No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17270.41474942122402714No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16830.40418255698902006No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT15440.3708008722466114No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14580.3501474557872794No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12460.2992343826549727No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12210.29323048252144596No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11810.28362424230780314No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11060.26561254190722294No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10250.24615990547459632No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9960.23919538131970527No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA9250.22214430494048934No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9120.21902227687105544No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8720.20941603665741265No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8330.20004995244911095No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8150.1957271443529717No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7960.19116418025149137No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7860.18876262019808068No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6830.16402655164795052No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG6670.16018405556249338No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA6410.1539399994236256No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6380.15321953140760236No Hit
ACTAGCTGTCCGTTCACCCTGCCTCGTGGTG6370.1529793754022613No Hit
GGTAACGATAATTCTACTGCAACTCTGTGTC6300.15129828336487383No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6110.1467353192633935No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6070.1457746952420292No Hit
GTGAGCGTAGACTGCTCCGAATACCCAAAAC5780.1388101710871382No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5750.138089703071115No Hit
CTGGGCCATCACGCAGTGCCGAACGGTACCC5510.13232595894292934No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5290.1270425268254258No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5290.1270425268254258No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5260.1263220588094026No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5060.1215189387025812No Hit
GGCCGCTCCGACGCGTCCCATGGCCAGTCTG4940.11863706663848836No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4920.11815675462780621No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4820.11575519457439554No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4790.11503472655837231No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4610.11071191846223306No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4590.11023160645155093No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4580.10999145044620987No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG4490.10783004639814023No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4470.1073497343874581No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC4450.10686942237677595No Hit
GCAGTTTCTGTTGACTGCTCTGAATACCCGA4340.1042277063180242No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4280.10278677028597778No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4260.10230645827529564No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4220.10134583425393136No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)