FastQCFastQC Report
Wed 8 May 2024
EGAF00007962408

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962408
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439195
Total Bases19.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT13990.31853732396771367No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13600.30965744145539No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11780.2682179897312128No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10610.24157834219424176No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8950.20378191919306915No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7620.17349924293309352No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5230.11908150138321247No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT5210.1186261227928369No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5120.11657691913614682No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5010.11407233688908115No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4670.10633090085269642No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)