FastQCFastQC Report
Wed 8 May 2024
EGAF00007962409

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962409
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439195
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29680.675781828117351No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21640.4927196347863705No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14100.3210419062147793No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11320.2577442821525746No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10020.2281446737781623No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8850.20150502624119127No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5150.11725998702171019No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5070.11543847266020789No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5060.11521078336502011No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4720.10746934732863535No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4590.10450938649119411No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4480.10200480424412846No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)