FastQCFastQC Report
Wed 8 May 2024
EGAF00007962410

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962410
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414528
Total Bases18.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT12720.30685502547475685No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12490.3013065462405435No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11490.27718272348309403No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9660.23303612783696157No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8660.2089123050795121No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6820.16452447120580516No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT5150.1242376872008646No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4970.1198953991045237No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4630.11169329936699089No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4520.10903967886367145No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4460.10759224949822449No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)