FastQCFastQC Report
Wed 8 May 2024
EGAF00007962411

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962411
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414528
Total Bases12.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39150.9444476609541455No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27630.666541222788328No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20210.4875424579280531No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12690.3061313107920334No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10430.2516114713601976No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8630.20818859039678866No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5050.12182530492511966No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4840.11675930214605527No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4770.1150706345530338No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4240.10228500849158562No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4180.10083757912613864No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)