FastQCFastQC Report
Wed 8 May 2024
EGAF00007962412

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962412
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445791
Total Bases19.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13720.30776754129177125No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT13510.303056813618938No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12240.2745681272165656No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10980.24630376117956623No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9000.20188832883570998No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7490.16801595366438535No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT5670.1271896471664973No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5190.11642226962859277No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5030.1128331437826246No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4880.10946833830202943No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4790.10744945501367234No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4670.1047576106291962No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4610.10341168843695814No Hit
CGGGAAGTGCTGACCACGTTTCAGCAGCTGTTTATGTTCCTGGT4500.10094416441785499No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)