FastQCFastQC Report
Wed 8 May 2024
EGAF00007962413

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962413
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445791
Total Bases13.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28880.6478372151972561No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21930.4919345612630134No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13710.30754322092639824No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11010.24697672227568523No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9510.21332866746973356No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9380.21041250271988443No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5720.12831124899336235No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5460.12247891949366406No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4960.1112629012250135No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4920.11036561976352148No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4770.10700081428292631No Hit
CAGCCGCAGCAGCAACAGCCTCAGCAACAGC4600.10318736807158511No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4510.10116848478322801No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)