FastQCFastQC Report
Wed 8 May 2024
EGAF00007962415

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962415
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420019
Total Bases13 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38420.9147205245476989No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29180.694730476478445No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20010.476407019682443No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12940.3080813010839986No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10500.24998869098778864No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8610.2049907266099867No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5100.12142307847978306No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4950.11785181146567178No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4650.11070927743744925No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4590.10928077063180476No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4450.1059475880853009No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4400.10475716574726382No Hit
CAGCCGCAGCAGCAACAGCCTCAGCAACAGC4240.10094781426554514No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)