FastQCFastQC Report
Wed 8 May 2024
EGAF00007962416

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962416
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444250
Total Bases19.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG11710.26359032076533484No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8760.19718626899268432No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7560.1701744513224536No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6910.1555430500844119No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6640.14946539110861No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6030.1357343837929094No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5650.12718064153066966No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT4950.11142374788970175No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4550.1024198086662915No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)