FastQCFastQC Report
Wed 8 May 2024
EGAF00007962417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444250
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA13320.29983117613956106No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11440.2575126617895329No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8920.2007878446820484No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8560.1926842993809792No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7390.16634777715250423No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7380.16612267867191896No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6600.14856499718626898No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6180.13911086100168824No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5780.130106921778278No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5400.12155317951603825No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5380.12110298255486776No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5350.120427687113112No Hit
GAAGATTTCGACATCTACGTGGACTCTTTCC4710.1060213843556556No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)