FastQCFastQC Report
Wed 8 May 2024
EGAF00007962419

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962419
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419645
Total Bases13 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38980.9288803631641029No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11960.2850027999857022No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10370.24711363176017825No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8000.19063732440515196No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6550.15608430935671816No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6160.14679073979196702No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5710.13606739029417722No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5530.1317780504950613No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5140.12248448093031014No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5140.12248448093031014No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5080.12105470099727152No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5010.11938662440872644No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4480.10675690166688509No Hit
GAAGATTTCGACATCTACGTGGACTCTTTCC4410.10508882507834001No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)