FastQCFastQC Report
Wed 8 May 2024
EGAF00007962420

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962420
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449810
Total Bases19.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG11390.25321802538849736No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8560.1903025721971499No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7610.1691825437406905No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6690.1487294635512772No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6630.14739556701718504No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6100.13561281429937086No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5370.11938373980124942No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT5280.11738289500011116No Hit
TGGCTGGGTCGGAACGTGTTTTTTCGGGACGCTGCTGAAGGCAG4780.10626709054934307No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGCAGT4600.10226540094706654No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)