FastQCFastQC Report
Wed 8 May 2024
EGAF00007962421

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962421
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449810
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA13460.2992374558146773No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11150.2478824392521287No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9190.2043084858051177No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8660.19252573308730353No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7440.16540317022742937No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7260.16140148062515283No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6880.15295346924256908No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5800.12894333162891No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5760.12805406727284852No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5740.1276094350948178No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5210.11582668237700361No Hit
GAAGATTTCGACATCTACGTGGACTCTTTCC5050.11226962495275783No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4940.10982414797358885No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)