FastQCFastQC Report
Wed 8 May 2024
EGAF00007962423

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962423
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425487
Total Bases13.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36440.8564303962283218No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12760.2998916535640337No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10960.257587188327728No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7910.18590462223287668No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6660.15652652137433104No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6630.15582144695372596No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6470.15206105004383214No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5570.13090881742567928No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5560.1306737926188109No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5520.12973369339133747No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5170.12150782515094469No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4690.11022663442126317No Hit
GAAGATTTCGACATCTACGTGGACTCTTTCC4520.10623121270450096No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4280.1005906173396602No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA4270.10035559253279185No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)