FastQCFastQC Report
Wed 8 May 2024
EGAF00007962425

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962425
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509322
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA66801.3115475082560737No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA36800.7225291662249029No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA32570.6394775799985079No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17470.3430050145094852No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15070.29588354714699144No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11800.23168054786559386No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11250.22088187826168906No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11050.21695508931481458No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG10780.21165392423653406No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9530.1871114933185686No Hit
ATCGATGATGTTAAAGGTCGTGTGCCGATGA7650.15019967721794858No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7420.14568386992904292No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC7260.14254243877154335No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC6250.12271215458982726No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6190.12153411790576492No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6100.1197670628796714No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG5320.10445258598686097No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG5100.10013311814529904No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)