FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007962427

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962427
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478707
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA62341.3022579573726727No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44370.9268717608056704No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA33840.7069042232513834No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA29390.6139454823096383No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15940.3329802990138018No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13910.29057440146060115No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10840.22644331501315001No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10190.2128650719542434No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9780.20430033402477923No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG9580.2001224130835772No Hit
ATCGATGATGTTAAAGGTCGTGTGCCGATGA7660.16001437204803776No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6760.14121372781262861No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC6700.139960351530268No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5880.12283087567133968No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5180.10820815237713258No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG5020.10486581562417095No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC4980.10403023143593054No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)