FastQCFastQC Report
Wed 8 May 2024
EGAF00007962428

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962428
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515627
Total Bases22.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT30310.5878280229700927No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC30040.5825916796443941No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC24430.4737921016548784No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG18380.3564592234308909No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17540.3401683775287175No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC15490.3004109559817465No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10590.20538102155240123No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG9920.19238713255900097No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8190.15883574754619134No Hit
GCGTTCCAGCAGTTTCATTGCGACTTCGTCTTCCGGGTTAACGA8050.15612060656249577No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8020.15553879063741813No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT7450.1444842880609433No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6600.12799950351707726No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC6240.12101771241614578No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6220.1206298351327607No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5810.11267835082336651No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5800.11248441218167397No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT5550.10763594613936044No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5520.10705413021428281No Hit
AGCACCAGCAACAGCGTCCACGTTTGCGGTCTGCTGTTCAACGA5370.10414505058889469No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5360.10395111194720213No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)