FastQCFastQC Report
Wed 8 May 2024
EGAF00007962430

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962430
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487093
Total Bases21.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT29950.6148723139113065No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC28290.5807925796511139No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC23370.4797851744943984No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16630.3414132414138573No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG16150.33155886042295823No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC13990.2872141459639124No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10010.205504903581041No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG9660.19831941744184373No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8720.17902125466799976No Hit
GCGTTCCAGCAGTTTCATTGCGACTTCGTCTTCCGGGTTAACGA7530.15459060179472914No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7190.14761041525950896No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT7070.1451468200117842No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6320.1297493497135044No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5780.11866317109874296No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5750.11804727228681175No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5620.11537837743510994No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC5520.11332538139533928No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5480.11250418297943103No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5130.10531869684023379No Hit
AGCACCAGCAACAGCGTCCACGTTTGCGGTCTGCTGTTCAACGA4920.10100740515671545No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4910.10080210555273839No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT4890.10039150634478426No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)