FastQCFastQC Report
Wed 8 May 2024
EGAF00007962431

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962431
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487093
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA63631.3063213801060578No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41500.8519933565048152No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA32420.6655813160936412No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA30490.6259584925260679No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16200.33258535844284354No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14290.29337313408322435No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11160.22911435803840335No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10850.22275007031511435No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10200.20940559605660522No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG9740.19996181427366028No Hit
ATCGATGATGTTAAAGGTCGTGTGCCGATGA7500.15397470298279795No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7190.14761041525950896No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC7120.14617331803166952No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6300.1293387505055503No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5880.12071616713851359No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC5540.1137359806032934No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5100.10470279802830261No Hit
GCGGGCGATTCCGAGATTGGCGGTAAAGGCG5010.10285510159250902No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)