FastQCFastQC Report
Wed 8 May 2024
EGAF00007962432

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962432
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495094
Total Bases21.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17030.3439750835194933No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13710.2769171106900912No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT13630.2753012559231176No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12010.24258019689190335No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG10680.21571661139096818No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8720.17612816960011635No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG6640.1341159456588042No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6160.12442081705696292No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG6070.12260298044411769No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)