FastQCFastQC Report
Wed 8 May 2024
EGAF00007962433

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962433
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495094
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30950.62513381297289No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16910.34155130136903294No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT14670.2963073678937737No Hit
TACGACGACTTCCATACCGATGAAGATAAAC11400.23025930429373007No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9580.19349860834508195No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8620.17410835114139941No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6720.13573180042577773No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6440.13007630874137033No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5940.11997721644778567No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)