FastQCFastQC Report
Wed 8 May 2024
EGAF00007962435

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962435
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466920
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45640.9774693737685256No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28030.6003169707872869No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14790.3167566178360319No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT13990.29962306176646963No Hit
TACGACGACTTCCATACCGATGAAGATAAAC10400.22273622890430908No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7410.15869956309432023No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6980.14949027670693052No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6740.14435020988606187No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5910.126574145463891No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)