FastQCFastQC Report
Wed 8 May 2024
EGAF00007962436

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962436
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501698
Total Bases22 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17290.34462963775020033No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT14580.29061307798715563No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13230.2637044596550116No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12550.25015048893956127No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG11210.22344119370617385No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8580.17101921873318213No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7290.14530653899357782No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG6990.13932684603087914No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG5880.11720198206889403No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)