FastQCFastQC Report
Wed 8 May 2024
EGAF00007962437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501698
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29860.5951787728872748No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17230.3434336991576606No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT15720.3133359112454106No Hit
TACGACGACTTCCATACCGATGAAGATAAAC11820.23559990273032783No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10250.2043061762255381No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8570.17081989563442548No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7480.14909367786995362No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7120.14191804631471522No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5770.11500942798257117No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)