FastQCFastQC Report
Wed 8 May 2024
EGAF00007962438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472972
Total Bases20.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16150.3414578452847103No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT12990.2746462792723459No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12910.2729548472214No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12310.2602691068393055No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG10310.21798330556565718No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8260.1746403592601676No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG6990.14778887545140093No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6340.13404599003746523No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG5920.12516597176999905No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)