FastQCFastQC Report
Wed 8 May 2024
EGAF00007962439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472972
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42530.8992075640841318No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29370.6209669917035258No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15700.3319435399981394No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT14170.29959490202379846No Hit
TACGACGACTTCCATACCGATGAAGATAAAC10500.22200045668665375No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8170.17273749820285345No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7090.14990316551508334No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6440.13616028010114764No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5730.12114882064900248No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)