FastQCFastQC Report
Wed 8 May 2024
EGAF00007962442

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962442
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418703
Total Bases18.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA29730.710049844400446No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA28130.6718366001676606No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19570.46739574352225804No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18140.43324265648920596No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15630.3732956295990237No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15050.3594433285646389No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12200.2913759872749897No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11400.2722693651585969No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11110.26534321464140453No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11080.2646267163120398No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10220.24408709753691754No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9680.23119012760835245No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8860.21160583993904986No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC8750.20897867939804587No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG8470.2022913616573084No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8390.20038069944566914No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8220.19632054224593565No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC8030.19178271949329237No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7740.1848565689761No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6850.16360045187161304No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6750.16121212410706395No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6660.15906262911896976No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6470.15452480636632648No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6370.1521364786017774No Hit
ACGCAGGGTGTCTTTGAAGAAGCCCATGTAATATTCACGGTAAG6220.14855398695495375No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC6170.1473598230726792No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6070.1449714953081301No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5940.14186666921421628No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5900.14091133810839665No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5430.1296861976150159No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5330.12729786985046682No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5220.12467070930946281No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC5150.12299887987427843No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5070.12108821766263914No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5070.12108821766263914No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4870.11631156213354095No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4450.10628058552243475No Hit
TTCCTGGCCCTCTTCGCCTTCATCACCATCGCCACCTTCGTCGC4340.10365342498143075No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4260.10174276276979147No Hit
CTGTTTTTTACGCGCGCCACGTGGTGCGGTATCGTGCGGCTGAC4230.10102626444042674No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4220.10078743166397183No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)