FastQCFastQC Report
Wed 8 May 2024
EGAF00007962443

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962443
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418703
Total Bases12.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT69481.659410130808712No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39180.9357468181503357No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29010.6928538844956926No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19390.4630967535460696No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17070.40768754940853064No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15400.36780247574056074No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13230.31597576324984533No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12990.3102437766149275No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12020.2870769972988013No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11880.28373333842843257No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11770.28110617788742853No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11370.2715528668292322No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10170.24289293365464304No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10140.24217643532527827No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG9250.22092031822079136No Hit
TACGACGACTTCCATACCGATGAAGATAAAC9030.21566599713878334No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8120.19393221448138656No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT7990.19082738838747274No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7720.1843789034231902No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6830.16312278631870322No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6490.1550024719192363No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6350.15165881304886758No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6220.14855398695495375No Hit
GTTCTGCAGGGTGTTCAGAGCTTTGTGGGCG6200.14807632140204394No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6160.1471209902962243No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6120.14616565919040467No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6040.14425499697876537No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6040.14425499697876537No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5930.1416278364377614No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5400.12896969928565116No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5230.12490954208591772No Hit
GCACCGACCTGCAACATCCGTGTGACCGTTT5160.12323771265073334No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4910.11726689323936058No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4900.11702806046290568No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4670.11153490660444276No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA4560.10890774606343875No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4490.1072359166282544No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4460.10651941829888965No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4400.1050864216401602No Hit
GCTCCGACCTGCAACATCCGTGTTACCGTTT4370.10436992331079548No Hit
CCGAGCACTAAACCGCGTCCGAAAAACCCTC4290.1024592610991562No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4280.10222042832270128No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4190.1000709333346071No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)