FastQCFastQC Report
Wed 8 May 2024
EGAF00007962444

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962444
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447145
Total Bases19.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA30170.6747252009974394No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA30010.6711469433852553No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21180.4736718514128526No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19760.4419148151047199No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA17500.39137192633262136No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16270.3638640709389572No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12980.29028614878842435No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12250.27396034843283495No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12110.270829373022174No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11960.26747475651075153No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10930.24443972313231724No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10290.2301266926835814No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG9230.2064207360028626No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC9100.20351340169296314No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8980.20082970848382514No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8640.19322591105793424No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC8540.19098950005031926No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8510.19031857674803473No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8020.17936016281072134No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7710.17242728868711493No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7290.163034362455132No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC7100.15878518154066354No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6870.1536414362231491No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6810.1522995896185801No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6790.1518523074170571No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6730.15051046081248812No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6590.14737948540182716No Hit
ACGCAGGGTGTCTTTGAAGAAGCCCATGTAATATTCACGGTAAG6580.14715584430106565No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6250.1397756879759362No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6130.13709199476679826No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6060.13552650706146777No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5790.1294881973409073No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC5360.11987163000816291No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5260.11763521900054791No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG4850.1084659338693265No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4730.10578224066018853No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4600.10287490635028905No Hit
ATAATCCCAAGATTCGTCCAGGTCCGCCGGGTCGATGGACGGTG4590.10265126524952756No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4570.10220398304800456No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4500.10063849534267406No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT4500.10063849534267406No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)