FastQCFastQC Report
Wed 8 May 2024
EGAF00007962446

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962446
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423590
Total Bases18.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA29560.6978446138955122No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA27530.6499209140914564No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20000.472154677872471No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19040.4494912533345924No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16810.39684600675181186No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14930.3524634670317996No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12400.29273590028093205No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11970.2825845747066739No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11580.2733775584881607No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11120.2625180008970939No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10650.25142236596709083No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9840.23230010151325575No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC9260.2186076158549541No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC9010.2127056823815482No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG8940.21105314100899455No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC8490.20042966075686394No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8090.1909865671994145No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8020.18933402582686087No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7750.18295993767558252No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7220.17044783871196204No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT7060.16667060128898226No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6780.16006043579876766No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6470.15274203829174438No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6250.1475483368351472No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6250.1475483368351472No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC6200.14636795014046602No Hit
ACGCAGGGTGTCTTTGAAGAAGCCCATGTAATATTCACGGTAAG6020.1421185580396138No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6000.1416464033617413No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5770.1362166245662079No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5610.13243938714322812No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5350.126301376330886No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5270.1244127576193961No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5140.12134375221322506No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC4890.11544181873981918No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4690.11072027196109445No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4550.10741518921598715No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4420.10434618380981611No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4320.10198541042045373No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)