FastQCFastQC Report
Wed 8 May 2024
EGAF00007962447

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962447
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423590
Total Bases13.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT68791.623976014542364No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37090.8756108501144975No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29740.7020940059963644No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20070.4738072192450247No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG18600.43910385042139805No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15500.36591987535116505No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13230.3123303194126396No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12540.2960409830260393No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12290.2901390495526335No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12120.28612573479071746No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11790.27833518260582163No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11350.26794777969262734No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10610.25047805661134587No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG9760.23041148280176588No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9750.23017540546282964No Hit
TACGACGACTTCCATACCGATGAAGATAAAC9390.22167662126112514No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT8470.1999575060789915No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8150.19240303123303193No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7690.1815434736419651No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7180.1695035293562171No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7120.16808706532259968No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6970.16454590523855617No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6560.1548667343421705No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6400.15108949691919074No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6320.14920087820770084No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6010.14188248070067755No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5970.1409381713449326No Hit
GTTCTGCAGGGTGTTCAGAGCTTTGTGGGCG5780.13645270190514414No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5730.13527231521046296No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5200.12276021624684247No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5060.11945513350173516No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5020.11851082414599022No Hit
GCACCGACCTGCAACATCCGTGTGACCGTTT4980.11756651479024528No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4820.11378927736726552No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4740.11190065865577563No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4490.10599872518236975No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4480.1057626478434335No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4430.10458226114875233No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4400.10387402913194363No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA4280.10104110106470879No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)