FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007962459

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962459
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507074
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40870.8059967578696601No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG38520.7596524373168413No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA21160.4172960948500613No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21010.41433794672966867No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20090.3961946382579269No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT18240.3597108114397504No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC18070.35635824356997203No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT16830.3319042191080592No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14110.27826313319160517No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC13860.27333288632428404No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12650.2494704914864497No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12050.23763789900487897No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC11730.23132718301470792No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC11640.22955229414247227No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11160.2200862201572157No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10980.2165364424127445No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA10650.2100285165478806No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC10610.20923967704910923No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10050.19819592406630984No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC10000.19720987469284565No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG8890.17531957860193975No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8830.17413631935378268No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8600.16960049223584722No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8580.16920607248646155No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8280.16328977624567617No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCAC8030.15835952937835504No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7860.15500696150857668No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7680.15145718376410544No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7670.1512599738894126No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA7240.14277994927762022No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7130.14061064065599893No Hit
ATTGAAGTTATCGACGTTGAAACCACTGAAG6930.13666644316214202No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6890.13587760366337065No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA6430.12680594942749973No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6400.12621431980342118No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6210.12246733218425714No Hit
GTACACGGCCACACCCAGGGCCCGTGGGACC6080.11990360381325015No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5990.11812871494101454No Hit
CCGCACCTGCAGAGCGAAACCGGTCCGCCGC5790.11418451744715762No Hit
TTCTCCCAGGTTGCTGACGTAGTCCGTGCAC5780.11398730757246477No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5770.11379009769777193No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG5490.10826822120637225No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5440.107282171832908No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA5390.1062961224594438No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5250.10353518421374396No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)