FastQCFastQC Report
Wed 8 May 2024
EGAF00007962463

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962463
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515271
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGAAGTGATTGACGTTGAAACCACTGAAG40790.7916222725517252No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40380.783665294573147No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22900.44442633099863954No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21120.4098814022135924No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA20130.39066821148483033No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC17990.34913666788932424No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT17900.3473900141867095No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT16410.31847319177675437No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC14350.2784942292502392No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13620.26432692699569743No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12730.24705446260317385No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11660.22628869080542083No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC11660.22628869080542083No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA11430.22182502023207207No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC11400.2212428023312005No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11400.2212428023312005No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11130.21600284122335625No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC10690.2074636453439064No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10440.20261182950330991No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC10050.19504299679197937No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9430.18301049350730006No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC9350.18145791243830917No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8930.17330686182610702No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG8450.16399137541216177No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCAC8230.15972177747243685No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7900.15331738056284946No Hit
ATTGAAGTTATCGACGTTGAAACCACTGAAG7780.1509885089593631No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7760.1506003636921154No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7710.1496300005239961No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7420.14400189414890416No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7340.1424493130799133No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7270.14109080464454626No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7160.1389560056746838No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA7010.1360449161703259No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA6870.13332789929959185No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6580.12769979292449993No Hit
TTCTCCCAGGTTGCTGACGTAGTCCGTGCAC5890.11430878120445359No Hit
GTACACGGCCACACCCAGGGCCCGTGGGACC5810.11275620013546271No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5600.10868067482936164No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT5520.10712809376037076No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5510.10693402112674691No Hit
CCGCACCTGCAGAGCGAAACCGGTCCGCCGC5500.10673994849312303No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5410.1049932947905083No Hit
GGTCACGGTCAGGACCAGGTTAGCCAGTTCC5390.10460514952326057No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5270.10227627791977426No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5160.1001414789499118No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)