FastQCFastQC Report
Wed 8 May 2024
EGAF00007962465

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962465
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547236
Total Bases16.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11060.2021065865549781No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8970.1639146547376269No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7790.14235174586467264No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7520.13741785993611533No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7090.1295601897535981No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6880.1257227229202757No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6540.11950968138061092No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)