FastQCFastQC Report
Wed 8 May 2024
EGAF00007962466

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962466
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519099
Total Bases22.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8610.16586431489947004No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7210.1388945075987432No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6590.1269507357941356No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6510.1254096039483798No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6470.12463903802550189No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5230.10075149441628667No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)