FastQCFastQC Report
Wed 8 May 2024
EGAF00007962467

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962467
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519099
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42100.8110206338289998No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11220.21614374136725364No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6990.13465639502291468No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6840.13176677281212254No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6650.12810658467845248No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6350.12232734025686814No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5570.10730130476074892No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)