FastQCFastQC Report
Wed 8 May 2024
EGAF00007962469

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962469
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545041
Total Bases16.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11560.21209413603747243No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9700.1779682629380175No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8030.14732836612291553No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7900.14494322445467406No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7120.13063237444522524No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6430.11797277635994356No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6130.11246860327938633No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)