FastQCFastQC Report
Wed 8 May 2024
EGAF00007962470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524987
Total Bases23 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8530.16248021379577018No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7510.1430511612668504No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6590.12552691780939337No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6530.12438403236651574No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6330.1205744142235903No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5710.10876459798052143No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)