FastQCFastQC Report
Wed 8 May 2024
EGAF00007962471

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962471
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524987
Total Bases16.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42790.8150678016788987No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10700.20381457064651123No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7280.13867010040248615No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6980.13295567318809798No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6870.130860383209489No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6400.12190778057361422No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6200.11809816243068877No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)