FastQCFastQC Report
Wed 8 May 2024
EGAF00007962473

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962473
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences571306
Total Bases17.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG30290.5301887254816158No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28620.5009574553741778No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24860.43514333824605383No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24310.4255162732406101No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19670.34429885210377625No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC18200.31856833290740866No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16380.2867114996166678No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG15650.2739337587912607No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15630.2735836837001537No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG13210.23122459767620154No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12130.21232054275642126No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC11900.20829467920869027No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC11580.2026934777509776No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11410.19971783947656774No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11410.19971783947656774No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10390.18186400983010856No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10230.1790634091012522No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC9810.17171183218800434No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9380.16418521772920291No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9340.16348506754698883No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9290.16260987981922123No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG8940.15648356572484798No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8170.14300567471722683No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7690.1346038725306578No Hit
GACGACCCGGGTGAAGGCCCGTCTACTGGCC7630.1335536472573367No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6890.12060086888637614No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT6750.11815034324862683No Hit
GAACAGGGTCCGGCAGACGATCCGGGTGAAG6580.11517470497421696No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6470.11324929197312823No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6410.11219906669980712No Hit
GAACAGGGCCCGGCGGACGATCCGGGTGAGG6330.11079876633537894No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6230.10904839087984372No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6060.10607275260543386No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)