FastQCFastQC Report
Wed 8 May 2024
EGAF00007962475

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962475
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548088
Total Bases16.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44220.8068047466830144No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG28620.5221789201734028No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26320.4802148560085242No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24580.44846812920552903No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23250.42420195297105573No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18290.3337055363372305No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC17920.32695479558027174No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG15650.28553808877406545No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15640.28535563632117467No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14710.26838755820233245No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG11840.21602370422267955No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11730.21401672724088106No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC11690.2132869174293179No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC11310.20635372421946838No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10540.1923048853468786No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10440.19048036081797085No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9930.18117528572054123No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9510.1735122826991286No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC9440.17223511552889317No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9000.16420720760169902No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8720.15909853892075726No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG8610.1570915619389587No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8310.15161798835223542No Hit
GACGACCCGGGTGAAGGCCCGTCTACTGGCC7250.1322780283458131No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6930.12643954985330821No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6790.12388521551283736No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT6380.1164046649443155No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6340.1156748551327524No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6060.11056618645181066No Hit
GAACAGGGTCCGGCAGACGATCCGGGTGAAG5990.10928901928157524No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5850.10673468494110436No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5690.10381544569485193No Hit
GAACAGGGCCCGGCGGACGATCCGGGTGAGG5540.10107865890149027No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)