FastQCFastQC Report
Wed 8 May 2024
EGAF00007962477

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962477
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences569532
Total Bases17.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG31500.5530856914097891No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28060.49268522225265654No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25860.4540570152335601No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23990.4212230392673283No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC19310.3390503079721596No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19110.3355386527886054No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17180.3016511802673072No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG16330.28672664573720175No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15600.2739091043172289No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG13260.23282273866964456No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11880.20859231790312047No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC11810.20736323858887648No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC11660.20472949720121084No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11570.20314925236861142No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11340.1991108489075241No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10790.18945379715274996No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10560.18541539369166263No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC10310.18102582471221984No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9650.16943736260649095No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9420.1653989591454036No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG9030.1585512315374729No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8990.15784890050076203No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8910.15644423842734034No Hit
GACGACCCGGGTGAAGGCCCGTCTACTGGCC7550.13256498317917167No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7500.13168706938328312No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7180.12606842108959637No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT6430.11289971415126805No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6410.11254854863291264No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6150.10798339689429216No Hit
GAACAGGGTCCGGCAGACGATCCGGGTGAAG6150.10798339689429216No Hit
GAACAGGGCCCGGCGGACGATCCGGGTGAGG6120.10745664861675902No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6000.1053496555066265No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5840.1025403313597831No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)