FastQCFastQC Report
Wed 8 May 2024
EGAF00007962479

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962479
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences552793
Total Bases17.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42480.7684612504138078No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG28850.5218951759519386No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27510.4976546374501848No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24740.4475454645771564No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24710.4470027659539828No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18830.34063383581195855No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC18060.326704571150503No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15980.2890774666104672No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG15720.28437407854296276No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14920.2699021152583336No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG12500.22612442632233043No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12420.22467722999386752No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11450.20712997451125467No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC11370.20568277818279174No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC10800.19537150434249345No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10570.1912108148981626No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10290.1861456277485424No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10110.18288943600950083No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC9460.17113096584073967No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8840.15991519429515208No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8680.15702080163822627No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG8570.15503090668658973No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8430.15249831311177964No Hit
GACGACCCGGGTGAAGGCCCGTCTACTGGCC7240.13097126772589376No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7080.12807687506896795No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6980.1262678796583893No Hit
GAACAGGGTCCGGCAGACGATCCGGGTGAAG6440.11649930444126463No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT6430.11631840490020677No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6310.1141476104075124No Hit
GAACAGGGCCCGGCGGACGATCCGGGTGAGG6080.10998692096318152No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5960.10781612647048715No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5790.10474083427250344No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5660.1023891402387512No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)