FastQCFastQC Report
Wed 8 May 2024
EGAF00007962481

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962481
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences566723
Total Bases17.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGAACGCCAGAAACGTGTTGACGATGAGG29150.5143606312078388No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27960.4933627186473815No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17410.307204754350891No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15690.2768548303139276No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG14560.25691563603382955No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14270.25179849767876017No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG13800.2435052044826132No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12080.2131552804456498No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11320.19974484889443345No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC10060.17751176500689048No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9640.1701007370443762No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT9530.16815975353038434No Hit
CCAGCGGCTGAAGCTCACGCCGCGCGTTCCG9250.16321906822204146No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8990.15863128900715165No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA8610.15192607323154345No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7720.13622175207288215No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)