FastQCFastQC Report
Wed 8 May 2024
EGAF00007962483

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962483
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543120
Total Bases16.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44150.8128958609515393No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG26910.4954706142288997No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26310.48442333186036235No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16570.3050891147444395No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14790.27231551038444546No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG14520.26734423331860363No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13630.2509574311386066No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG13520.24893209603770805No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11300.20805715127411992No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10430.19203859183974076No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC9930.18283252319929297No Hit
CCAGCGGCTGAAGCTCACGCCGCGCGTTCCG8890.16368390042716158No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT8340.15355722492266904No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8290.15263661805862425No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA8090.14895419060244514No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7850.1445352776550302No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA5440.10016202680807187No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)